STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW43608.1LacI family transcriptional regulator. (339 aa)    
Predicted Functional Partners:
SEW41889.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.929
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.849
SEW43625.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.764
SEW43642.1
Predicted dehydrogenase.
 
     0.681
SEW43634.1
Sugar phosphate isomerase/epimerase.
 
    0.656
SEW43651.1
3-hydroxyisobutyrate dehydrogenase.
   
   0.639
SEW43599.1
Succinyl-diaminopimelate desuccinylase.
  
    0.563
xylB
Xylulokinase.
 
 
 
 0.556
SEW46442.1
Phosphocarrier protein.
   
 
 0.539
SEW05543.1
Xaa-Pro dipeptidase.
  
   0.456
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.