STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW44141.1Type VI secretion system secreted protein VgrG. (750 aa)    
Predicted Functional Partners:
SEW40159.1
Type VI secretion system protein ImpK.
 
  
 0.958
SEW44150.1
Hypothetical protein.
 
    0.946
SEW40023.1
Type VI secretion system protein ImpH.
 
 
 0.925
SEW39996.1
Type VI secretion system secreted protein Hcp.
 
  
 0.918
SEW39977.1
Type VI secretion system protein ImpB.
 
  
 0.917
SEW39967.1
Type VI secretion system protein ImpA.
 
  
 0.910
SEW44176.1
RHS repeat-associated core domain-containing protein.
  
 0.905
SEW39986.1
Type VI secretion system protein ImpC.
 
  
 0.847
SEW40005.1
Type VI secretion system protein ImpF.
 
  
 0.842
SEW40014.1
Type VI secretion system protein ImpG.
 
  
 0.827
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.