STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW45798.1Heat shock protein HspQ. (108 aa)    
Predicted Functional Partners:
SEW39171.1
Protein of unknown function.
 
     0.712
SEW45793.1
Hypothetical protein.
       0.685
SEW45787.1
Hypothetical protein.
       0.658
SEW10685.1
NifU homolog involved in Fe-S cluster formation.
  
   
 0.578
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.561
SEW39178.1
NlpC/P60 family protein.
  
     0.558
SEV95692.1
GcrA cell cycle regulator.
  
     0.551
SEW45811.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
     
 0.457
SEW45804.1
Pimeloyl-ACP methyl ester carboxylesterase; Manually curated.
       0.443
SEW42430.1
UDP-glucose pyrophosphorylase.
      
 0.439
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.