STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW47327.1N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family. (196 aa)    
Predicted Functional Partners:
SEW47324.1
LuxR family transcriptional regulator.
 
 
 0.933
SEW03481.1
Autoinducer binding domain-containing protein.
 
 
 0.890
SEW28312.1
Regulatory protein, luxR family.
  
 
 0.818
SEW03506.1
Transcriptional regulator, LuxR family.
 
 
  0.786
SEV95057.1
DNA (cytosine-5)-methyltransferase 1.
     
 0.728
SEW47332.1
Putative ATPase.
       0.675
SEW47344.1
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.585
SEW47348.1
Chaperone required for the assembly of the F1-ATPase.
       0.585
crcB
Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.584
SEW29266.1
Regulatory protein, luxR family.
  
 
 0.547
Your Current Organism:
Cognatiyoonia koreensis
NCBI taxonomy Id: 364200
Other names: C. koreensis, CIP 109899,, DSM 17925, KACC 11519, Loktanella koreensis, Loktanella koreensis Weon et al. 2006, strain GA2-M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.