STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0012KEGG: pol:Bpro_0024 hypothetical protein. (340 aa)    
Predicted Functional Partners:
Pnap_0014
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_0026 endonuclease/exonuclease/phosphatase.
  
 0.972
clsB
Phospholipase D/Transphosphatidylase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
  
 0.969
Pnap_3231
TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related.
 
     0.528
Pnap_3378
PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_1115 glycosyl transferase, family 2.
 
     0.460
Pnap_2678
KEGG: pol:Bpro_1897 protein of unknown function DUF6, transmembrane.
  
     0.412
Pnap_1487
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative.
  
     0.411
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.