STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0028PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: sat:SYN_02036 von Willebrand factor type A like domain. (701 aa)    
Predicted Functional Partners:
Pnap_0025
PFAM: glycosyl transferase, family 51; KEGG: stt:t3243 monofunctional biosynthetic peptidoglycan transglycosylase.
 
     0.635
Pnap_0027
KEGG: hch:HCH_06497 hypothetical protein.
       0.624
Pnap_0029
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bur:Bcep18194_B0913 periplasmic sensor signal transduction histidine kinase.
 
     0.606
Pnap_0026
Hypothetical protein.
       0.558
Pnap_0499
PFAM: RNA 3'-terminal phosphate cyclase; KEGG: pol:Bpro_1474 RNA-3'-phosphate cyclase.
 
     0.530
Pnap_2409
PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein.
 
     0.467
Pnap_0030
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A0185 response regulator receiver:transcriptional regulatory protein, C-terminal.
 
     0.456
Pnap_4086
PFAM: pentapeptide repeat protein; KEGG: ana:all3114 hypothetical protein.
  
     0.404
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.