STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0036TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2. (1203 aa)    
Predicted Functional Partners:
Pnap_0035
Ankyrin; TIGRFAM: Ankyrin; PFAM: Amidase; KEGG: reu:Reut_B4882 amidase.
  
 0.999
Pnap_3392
Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.929
ureC
Urease, Metallo peptidase, MEROPS family M38; KEGG: pol:Bpro_1350 urease, alpha subunit; TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
 0.928
Pnap_0037
KEGG: neu:NE2417 hypothetical protein.
   
 0.927
Pnap_0038
KEGG: bxe:Bxe_B1382 hypothetical protein.
   
 0.927
Pnap_2381
propionyl-CoA carboxylase carboxyltransferase subunit; PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase.
 
 0.916
Pnap_1757
PFAM: Amidase; KEGG: pol:Bpro_2696 amidase; Belongs to the amidase family.
    
 0.913
ureB
KEGG: pol:Bpro_1351 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; Belongs to the urease beta subunit family.
    
 0.909
Pnap_3772
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_4603 arginase; Belongs to the arginase family.
  
 
 0.909
Pnap_0471
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase.
 
 0.903
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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