STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0037KEGG: neu:NE2417 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Pnap_0041
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: reu:Reut_B4888 ABC transporter, substrate-binding protein, aliphatic sulphonates.
 
     0.930
Pnap_0036
TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2.
   
 0.927
Pnap_0035
Ankyrin; TIGRFAM: Ankyrin; PFAM: Amidase; KEGG: reu:Reut_B4882 amidase.
 
   
 0.895
Pnap_0038
KEGG: bxe:Bxe_B1382 hypothetical protein.
 
    
0.837
Pnap_0040
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4887 binding-protein-dependent transport systems inner membrane component.
 
   
 0.837
Pnap_0039
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B4886 ABC transporter related.
 
   
 0.822
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.