STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0050PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (429 aa)    
Predicted Functional Partners:
Pnap_0051
PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS.
     0.961
Pnap_1404
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.930
Pnap_0048
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding.
 
   
 0.897
Pnap_0049
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase.
 
   
 0.896
Pnap_3355
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.858
Pnap_2461
PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region.
 
 
 0.849
Pnap_2488
Rieske (2Fe-2S) domain protein; PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region.
    
 0.830
nagAb
PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region.
 
 
 0.828
Pnap_0052
KEGG: rfr:Rfer_2847 hypothetical protein.
       0.779
Pnap_1405
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD.
 
 
 0.693
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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