STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0077TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: lpp:lpp2271 twitching motility protein PilU. (384 aa)    
Predicted Functional Partners:
Pnap_0768
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.810
Pnap_0767
PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein.
 
   
 0.797
Pnap_0672
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
  
  
 0.792
Pnap_0754
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rfr:Rfer_0544 general secretion pathway protein F.
 
   
 0.791
Pnap_0676
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein.
  
   
 0.621
Pnap_0076
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease.
       0.561
Pnap_0078
KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341.
       0.506
Pnap_0674
PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
 
  
 0.505
Pnap_0675
PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ.
  
   
 0.433
Pnap_2914
KEGG: xcv:XCV2814 type IV pilin PilE.
  
   
 0.430
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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