STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0094D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase. (455 aa)    
Predicted Functional Partners:
Pnap_1756
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase.
  
  
 
0.922
Pnap_2147
PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II.
  
 
 0.914
Pnap_1560
4-hydroxyphenylpyruvate dioxygenase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4496 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.909
Pnap_1120
KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.905
Pnap_1655
KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.905
Pnap_0246
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; PFAM: aminotransferase, class IV; KEGG: pol:Bpro_0317 aminotransferase, class IV.
     
 0.904
Pnap_1562
PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2175 aspartate transaminase.
     
 0.904
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_0805 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.902
Pnap_1666
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_A3261 twin-arginine translocation pathway signal.
  
 
 0.645
Pnap_0095
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0149 transcriptional regulator, LysR family.
 
     0.601
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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