STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0137PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pol:Bpro_0199 5-carboxymethyl-2-hydroxymuconate isomerase. (145 aa)    
Predicted Functional Partners:
Pnap_2718
PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: sit:TM1040_3469 5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 
0.920
Pnap_2026
4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like.
     
  0.900
Pnap_1599
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3103 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.833
Pnap_0136
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal.
       0.608
radA
DNA replication and repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.565
Pnap_2911
Tfp pilus assembly protein PilW-like protein; KEGG: bps:BPSL2754 putative membrane protein.
  
     0.531
Pnap_0799
PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase.
  
     0.489
Pnap_0139
PFAM: metallophosphoesterase; KEGG: pol:Bpro_0201 metallophosphoesterase.
       0.487
Pnap_0618
5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein.
 
  
 0.445
Pnap_0612
KEGG: bmb:BruAb2_1109 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, hypothetical; TC 3.A.1.4.-.
  
     0.436
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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