STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0194PFAM: VanZ family protein; KEGG: pol:Bpro_0247 VanZ like protein. (398 aa)    
Predicted Functional Partners:
Pnap_0195
KEGG: pol:Bpro_0248 ferredoxin-like.
       0.790
Pnap_3662
KEGG: pol:Bpro_4468 putative site-specific recombinase transmembrane protein.
 
     0.747
Pnap_3087
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
 
     0.711
Pnap_2904
PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748.
  
     0.708
Pnap_0193
PFAM: conserved hypothetical protein 701; KEGG: pol:Bpro_0246 conserved hypothetical protein 701.
       0.694
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
 
     0.692
Pnap_3895
KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.667
Pnap_0301
KEGG: pol:Bpro_0444 hypothetical protein.
  
     0.663
Pnap_0196
KEGG: pol:Bpro_0249 putative transmembrane protein.
       0.656
Pnap_3062
KEGG: pol:Bpro_3636 putative transmembrane protein.
  
     0.618
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.