STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0217PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein. (171 aa)    
Predicted Functional Partners:
Pnap_0888
PFAM: electron transport protein SCO1/SenC; KEGG: pol:Bpro_1255 electron transport protein SCO1/SenC.
 
 
 0.826
Pnap_0666
PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein.
 
  
 0.762
Pnap_0665
PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like.
 
  
 0.719
Pnap_1438
KEGG: pol:Bpro_3242 putative transmembrane protein.
  
     0.666
Pnap_2401
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 0.645
Pnap_0825
NAD-dependent formate dehydrogenase flavoprotein subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone).
  
 
 0.576
Pnap_0218
KEGG: pol:Bpro_0271 hypothetical protein.
       0.569
Pnap_2512
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_1597 cytochrome c biogenesis protein, transmembrane protein.
  
 
 0.537
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.535
Pnap_0878
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 
 0.509
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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