STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0232PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA. (493 aa)    
Predicted Functional Partners:
Pnap_1103
Isoamylase; KEGG: gbe:GbCGDNIH1_2172 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.967
Pnap_1105
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 0.962
Pnap_2625
Ethanolamine:proton symporter, EAT family; TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rfr:Rfer_0585 amino acid permease-associated protein; TC 2.A.3.5.1.
  
 0.955
Pnap_1102
KEGG: rfr:Rfer_0514 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77.
  
 
 0.950
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
  
 
 0.944
Pnap_3175
UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSc2237 probable UTP--glucose-1-phosphate uridylyltransferase protein.
    
 0.929
Pnap_0231
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06906 ABC-type sugar transport system, ATPase components; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
  
  
 0.861
Pnap_0229
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00048 probable sucrose ABC transporter, permease protein; TC 3.A.1.1.-.
 
  
 0.842
Pnap_0230
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_376 sugar ABC transporter, permease protein; TC 3.A.1.1.-.
 
  
 0.810
Pnap_0228
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein; TC 3.A.1.1.-.
 
  
 0.754
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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