STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0263PFAM: cytochrome c, class I; KEGG: pol:Bpro_0336 cytochrome c, class I. (293 aa)    
Predicted Functional Partners:
Pnap_0715
PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1.
 
  
 0.785
Pnap_1261
PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal.
    
 
 0.772
Pnap_0664
PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I.
 
   
 0.742
Pnap_1713
PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein.
  
     0.695
Pnap_3008
PFAM: cytochrome c, class I; KEGG: reu:Reut_B5418 cytochrome c, class I.
 
   
 0.647
Pnap_2770
KEGG: pol:Bpro_1829 membrane protein-like.
  
     0.629
Pnap_0572
PFAM: cytochrome c, class I; KEGG: sdn:Sden_3622 cytochrome c, class I.
 
   
 0.627
Pnap_0885
KEGG: pol:Bpro_1252 hypothetical protein.
 
     0.625
Pnap_1326
KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; Belongs to the multicopper oxidase family.
  
 
 0.617
Pnap_0713
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.604
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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