STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0313PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Pnap_0312
KEGG: tbd:Tbd_2217 hypothetical protein.
 
     0.710
Pnap_0311
KEGG: pol:Bpro_0460 hypothetical protein.
       0.643
Pnap_3163
KEGG: psp:PSPPH_3940 hypothetical protein.
  
     0.630
Pnap_0310
KEGG: pol:Bpro_0459 hypothetical protein.
       0.619
Pnap_1515
KEGG: pol:Bpro_0042 hemerythrin HHE cation binding region.
  
     0.587
Pnap_0307
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family.
 
     0.576
Pnap_0309
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase.
 
     0.535
Pnap_3572
KEGG: pol:Bpro_1655 hypothetical protein.
  
     0.524
Pnap_2454
Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase.
  
     0.453
Pnap_2942
benzoyl-CoA oxygenase, component A; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pol:Bpro_1630 oxidoreductase FAD/NAD(P)-binding.
  
     0.451
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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