STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0377Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: plu:plu2740 hypothetical protein. (164 aa)    
Predicted Functional Partners:
Pnap_0378
KEGG: ret:RHE_CH01166 hypothetical protein.
       0.788
Pnap_0376
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pol:Bpro_4257 thiol-disulfide interchange protein DsbD-like.
       0.505
Pnap_0374
KEGG: pol:Bpro_4259 putative lipoprotein.
 
     0.464
Pnap_0051
PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS.
  
     0.411
Pnap_0521
PFAM: HipA domain protein; KEGG: pol:Bpro_0617 HipA-like.
  
 
 0.401
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.