STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0405TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein. (977 aa)    
Predicted Functional Partners:
Pnap_0406
TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1046 protein of unknown function DUF11.
 
   
 0.948
Pnap_0404
TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1048 hypothetical protein.
 
     0.888
Pnap_1828
KEGG: bxe:Bxe_B0552 hypothetical protein.
 
     0.668
Pnap_0407
TIGRFAM: conserved repeat domain; KEGG: mmu:239611 mucin 19.
 
   
0.635
Pnap_2194
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: pol:Bpro_2264 RecB family exonuclease-like.
 
     0.547
Pnap_2754
PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1841 cupin 2, conserved barrel.
  
     0.516
Pnap_0307
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family.
  
     0.502
Pnap_1238
PFAM: Fibronectin, type III domain protein; KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase.
  
     0.501
Pnap_1365
PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: rme:Rmet_3187 protein of unknown function DUF893, YccS/YhfK.
  
     0.475
Pnap_2721
SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase.
  
     0.471
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.