STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0424PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911. (136 aa)    
Predicted Functional Partners:
Pnap_0423
PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like.
     
 0.687
Pnap_0425
PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase.
       0.565
Pnap_0422
PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family.
     
 0.510
Pnap_0420
PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase.
       0.406
Pnap_0421
KEGG: sgl:SG2354 hypothetical protein.
       0.403
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.