STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0431PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like. (309 aa)    
Predicted Functional Partners:
Pnap_0435
KEGG: pol:Bpro_4221 putative lipase transmembrane protein.
 
    0.784
Pnap_0432
KEGG: pol:Bpro_4224 hypothetical protein.
       0.773
Pnap_0647
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
     0.650
Pnap_0438
PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase.
 
     0.622
Pnap_3102
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
  
     0.609
Pnap_1612
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
  
     0.603
Pnap_1243
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0962 hypothetical protein.
  
     0.583
Pnap_3512
PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family.
    
 
 0.577
Pnap_3585
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein.
  
    0.572
Pnap_3712
KEGG: pol:Bpro_4483 protein of unknown function DUF132.
  
     0.567
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.