STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0434PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_4222 glucose-methanol-choline oxidoreductase. (541 aa)    
Predicted Functional Partners:
Pnap_0433
KEGG: pol:Bpro_4223 hypothetical protein.
  
 0.986
Pnap_0435
KEGG: pol:Bpro_4221 putative lipase transmembrane protein.
  
    0.719
Pnap_2825
PFAM: cytochrome c, class I; KEGG: bmb:BruAb2_0829 cytochrome c family protein.
   
 
 0.611
Pnap_0431
PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like.
     
 0.559
Pnap_0432
KEGG: pol:Bpro_4224 hypothetical protein.
       0.554
Pnap_3496
PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4025 transcriptional regulator, TetR family.
  
  
 0.525
Pnap_1074
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold.
  
   
 0.487
Pnap_2398
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_4146 tetratricopeptide TPR_2.
    
 0.470
Pnap_2350
PFAM: Ankyrin; SMART: Rhodanese domain protein; KEGG: bxe:Bxe_B1461 putative ankyrin repeat protein.
   
 0.466
Pnap_1282
PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I.
  
 
 0.463
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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