STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0435KEGG: pol:Bpro_4221 putative lipase transmembrane protein. (302 aa)    
Predicted Functional Partners:
Pnap_0431
PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like.
 
    0.784
Pnap_0434
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_4222 glucose-methanol-choline oxidoreductase.
  
    0.719
Pnap_0433
KEGG: pol:Bpro_4223 hypothetical protein.
       0.673
Pnap_3812
PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4558 porin, gram-negative type.
  
    0.565
Pnap_0432
KEGG: pol:Bpro_4224 hypothetical protein.
       0.547
Pnap_3501
KEGG: pol:Bpro_4033 putative zinc protease protein.
 
     0.511
Pnap_0437
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator.
  
    0.422
Pnap_1247
KEGG: rfr:Rfer_2170 hypothetical protein.
  
     0.422
Pnap_3883
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
  
     0.418
Pnap_0436
PFAM: response regulator receiver; KEGG: dra:DR2556 response regulator.
       0.404
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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