STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0468PFAM: Ion transport 2 domain protein,; KEGG: nha:Nham_1961 ion transport 2. (148 aa)    
Predicted Functional Partners:
Pnap_0469
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family.
       0.727
Pnap_1255
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase.
  
    0.522
Pnap_0470
PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4161 AMP-dependent synthetase and ligase.
       0.511
Pnap_0473
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_4159 enoyl-CoA hydratase/isomerase.
   
   0.502
Pnap_0471
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase.
       0.484
Pnap_0472
PFAM: DinB family protein; KEGG: sme:SMc00593 hypothetical protein.
       0.481
Pnap_0474
KEGG: pol:Bpro_4158 putative transmembrane protein.
       0.442
Pnap_0475
3-methylcrotonoyl-CoA carboxylase, alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding.
       0.442
Pnap_0476
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.417
Pnap_0477
hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4155 pyruvate carboxyltransferase.
       0.417
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.