STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0474KEGG: pol:Bpro_4158 putative transmembrane protein. (223 aa)    
Predicted Functional Partners:
Pnap_0475
3-methylcrotonoyl-CoA carboxylase, alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding.
       0.835
Pnap_0477
hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4155 pyruvate carboxyltransferase.
       0.744
Pnap_0472
PFAM: DinB family protein; KEGG: sme:SMc00593 hypothetical protein.
       0.736
Pnap_0473
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_4159 enoyl-CoA hydratase/isomerase.
       0.736
Pnap_0476
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.729
Pnap_0479
PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4153 DsbA oxidoreductase.
       0.729
Pnap_0478
PFAM: YbaK/prolyl-tRNA synthetase associated region; protein of unknown function DUF1289; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region.
       0.724
Pnap_0471
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase.
       0.710
Pnap_0470
PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4161 AMP-dependent synthetase and ligase.
       0.656
Pnap_0481
PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: wsu:WS0596 DNA polymerase III, epsilon subunit, putative.
       0.557
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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