STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0493Transcriptional regulator, ArsR family; KEGG: pol:Bpro_4118 hypothetical protein; Belongs to the GbsR family. (207 aa)    
Predicted Functional Partners:
Pnap_0494
PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pol:Bpro_4117 cytochrome bd ubiquinol oxidase, subunit I.
 
  
 0.853
Pnap_0495
PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pol:Bpro_4116 cytochrome bd ubiquinol oxidase, subunit II.
 
  
 0.842
Pnap_0490
PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ.
     
 0.461
Pnap_0491
TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.461
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.461
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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