STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0515KEGG: pol:Bpro_4090 hypothetical protein. (208 aa)    
Predicted Functional Partners:
ttcA
tRNA s(2)C-32 sulfurtransferase; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
       0.770
Pnap_0517
KEGG: pol:Bpro_4088 dihydroneopterin aldolase.
       0.740
Pnap_0514
PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4091 phosphoglycerate mutase.
       0.721
Pnap_0518
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR.
       0.718
Pnap_0513
KEGG: pol:Bpro_4092 putative threonine aldolase.
       0.565
Pnap_0519
PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185.
       0.544
Pnap_0522
KEGG: pol:Bpro_4085 hypothetical protein.
       0.402
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.