STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0538Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_B1556 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Pnap_2821
PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_1733 beta-lactamase-like protein.
 
 
 0.918
Pnap_0539
KEGG: bxe:Bxe_B1555 serine O-acetyltransferase.
 
    0.678
Pnap_0540
PFAM: helix-turn-helix domain protein; KEGG: bpm:BURPS1710b_A0364 possible transcriptional regulator, XRE family, cupin domain.
       0.627
Pnap_2824
PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_B0675 putative metallo-beta-lactamase family protein.
 
 
 0.498
Pnap_0542
KEGG: bxe:Bxe_B1553 hypothetical protein.
 
    0.479
Pnap_0543
TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_C0124 cysteine desulphurases, SufS; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
     0.434
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
    0.417
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.