STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0548KEGG: long-chain-fatty-acid--CoA ligase-related protein. (403 aa)    
Predicted Functional Partners:
Pnap_0549
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein, putative; TC 3.A.1.4.-.
    0.944
Pnap_0550
PFAM: inner-membrane translocator; KEGG: psp:PSPPH_2369 branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
    0.928
Pnap_0551
PFAM: inner-membrane translocator; KEGG: branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
    0.923
Pnap_0552
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: ppu:PP_2770 hypothetical protein; TC 3.A.1.4.-.
 
    0.892
Pnap_3608
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related; TC 3.A.1.4.-.
    0.806
Pnap_3610
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
    0.789
Pnap_3609
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
    0.788
Pnap_3611
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rfr:Rfer_3538 hypothetical protein; TC 3.A.1.4.-.
 
    0.787
Pnap_3612
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3537 ABC transporter related; TC 3.A.1.4.-.
 
    0.785
Pnap_3613
KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase.
 
    0.784
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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