STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0570PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rba:RB1022 gluconolactonase. (334 aa)    
Predicted Functional Partners:
Pnap_1622
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.910
Pnap_0046
Gluconate kinase, SKI family; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rfr:Rfer_0956 carbohydrate kinase, thermoresistant glucokinase.
    
 0.909
Pnap_0591
Hypothetical protein; KEGG: ttj:TTHA0836 rhodanese-like domain protein.
 
 
    0.885
Pnap_0574
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 protein of unknown function DUF1501.
 
   
 0.868
Pnap_0575
PFAM: protein of unknown function DUF1549; KEGG: rba:RB2845 hypothetical protein-transmembrane prediction.
 
     0.846
Pnap_0571
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_II0300 bcp.
 
   
 0.803
Pnap_0569
PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor.
 
     0.708
Pnap_0572
PFAM: cytochrome c, class I; KEGG: sdn:Sden_3622 cytochrome c, class I.
       0.600
Pnap_0573
Hypothetical protein.
       0.583
Pnap_2091
Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: rfr:Rfer_3313 twin-arginine translocation pathway signal.
 
  
 0.556
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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