STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0577KEGG: bcn:Bcen_4344 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein. (362 aa)    
Predicted Functional Partners:
Pnap_0578
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B2062 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.
 
 
 0.991
Pnap_0579
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0132 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit.
 
 
 0.989
Pnap_2417
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1776 binding-protein-dependent transport systems inner membrane component.
 
 
 0.981
ssuB-2
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.974
Pnap_2420
KEGG: reu:Reut_A1977 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3.
  
  
  0.974
Pnap_0545
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcn:Bcen_6520 binding-protein-dependent transport systems inner membrane component.
 
 
 0.973
Pnap_2419
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates.
  
  
  0.973
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.956
Pnap_0544
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: pae:PA3449 putative sulfonate transport system substrate-binding protein.
  
  
 
0.928
Pnap_2421
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase.
 
 
  0.897
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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