STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0611PFAM: Carotenoid oxygenase; KEGG: ana:all1106 similar to neoxanthin cleavage enzyme. (481 aa)    
Predicted Functional Partners:
Pnap_0610
PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
     
 0.574
Pnap_4029
PFAM: cytochrome P450; KEGG: pol:Bpro_1581 cytochrome P450.
  
   
 0.448
Pnap_2687
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold.
  
     0.424
Pnap_1803
PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3826 ABC transporter related.
  
  
  0.420
Pnap_2623
KEGG: pol:Bpro_2909 putative uncharacterized conserved protein.
  
   
 0.415
Pnap_0608
KEGG: xac:XAC0352 hypothetical protein.
 
     0.400
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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