STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0615PFAM: regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: reu:Reut_B5810 regulatory protein, IclR. (261 aa)    
Predicted Functional Partners:
Pnap_0616
3-hydroxyphenylpropionate hydroxylase; PFAM: monooxygenase, FAD-binding; KEGG: reu:Reut_B5808 monooxygenase, FAD-binding:FAD dependent oxidoreductase.
 
   
 0.833
Pnap_0614
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5807 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.775
Pnap_0617
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065.
       0.714
Pnap_1648
PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1846 transcriptional regulator, IclR family.
  
     0.637
Pnap_0864
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family.
  
     0.614
Pnap_1902
TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2991 transcriptional regulator, IclR family.
  
     0.608
Pnap_0036
TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2.
  
    0.536
Pnap_1723
PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family.
  
     0.520
Pnap_0618
5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein.
       0.495
Pnap_3617
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding; KEGG: pol:Bpro_0593 NADH:flavin oxidoreductase/NADH oxidase.
 
 
 
 0.461
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.