STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0673PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly. (163 aa)    
Predicted Functional Partners:
Pnap_0672
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
 
 0.996
Pnap_0674
PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
 
 
 0.995
Pnap_0675
PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ.
 
 
 0.995
Pnap_0676
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein.
 
 
 0.995
Pnap_3879
PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM.
  
 
   0.848
Pnap_1870
KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
   
 0.835
Pnap_2913
KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1.
 
  
 0.834
Pnap_3043
KEGG: pol:Bpro_3613 putative transmembrane protein.
  
  
 0.832
Pnap_2914
KEGG: xcv:XCV2814 type IV pilin PilE.
 
  
 0.821
Pnap_1950
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
  
   
 0.815
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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