STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0747KEGG: pol:Bpro_0835 hypothetical protein. (170 aa)    
Predicted Functional Partners:
rppH
NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
       0.803
Pnap_1195
PFAM: NlpBDapX family lipoprotein; KEGG: pol:Bpro_3171 NlpBDapX lipoprotein.
  
     0.684
Pnap_1475
KEGG: pol:Bpro_1726 hypothetical protein.
  
     0.603
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.594
Pnap_0910
Dihydroneopterin triphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: pol:Bpro_0867 NUDIX hydrolase.
 
     0.568
Pnap_0650
PFAM: porin, Gram-negative type; KEGG: pol:Bpro_0747 porin, gram-negative type.
  
     0.556
Pnap_0744
PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic.
       0.549
Pnap_2603
PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type.
  
     0.524
Pnap_4106
PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239.
  
     0.519
Pnap_0649
PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type.
  
     0.502
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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