STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0767PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein. (405 aa)    
Predicted Functional Partners:
Pnap_0768
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.978
Pnap_0766
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: pol:Bpro_0841 type II secretion system protein E.
 
 0.973
Pnap_0755
KEGG: rfr:Rfer_0543 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
 0.928
Pnap_3152
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E.
 
 0.920
Pnap_3153
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E.
 
 0.907
Pnap_3239
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3882 type II secretion system protein E.
 
 0.907
Pnap_0672
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
 
 
 0.846
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.831
Pnap_0278
Pilus retraction ATPase PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0396 twitching motility protein.
  
 0.827
Pnap_0764
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rfr:Rfer_0534 general secretion pathway protein G.
 
  
 0.808
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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