STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0799PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase. (139 aa)    
Predicted Functional Partners:
Pnap_3622
PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_0588 thioesterase superfamily.
  
  
  0.935
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
     
 0.902
Pnap_1901
KEGG: rfr:Rfer_0339 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
     
  0.900
Pnap_0796
trans-feruloyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_3112 AMP-dependent synthetase and ligase.
 
  
 0.832
Pnap_0798
PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: rfr:Rfer_0271 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.760
Pnap_2944
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1628 enoyl-CoA hydratase/isomerase.
 
    0.711
Pnap_2943
KEGG: pol:Bpro_1629 benzoyl-CoA oxygenase component B.
 
     0.693
Pnap_0800
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0269 extracellular ligand-binding receptor; TC 3.A.1.4.-.
       0.636
Pnap_3957
PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family.
  
     0.600
Pnap_3145
Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase.
 
     0.584
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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