STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0807PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family. (197 aa)    
Predicted Functional Partners:
Pnap_0806
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3118 acyl-CoA dehydrogenase-like.
       0.773
Pnap_0796
trans-feruloyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_3112 AMP-dependent synthetase and ligase.
 
   
 0.588
Pnap_0805
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal.
       0.506
Pnap_1901
KEGG: rfr:Rfer_0339 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
  
  
 0.497
greB
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
  
    0.483
Pnap_0804
KEGG: pol:Bpro_3117 porin, gram-negative type.
       0.459
Pnap_0799
PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase.
 
     0.441
Pnap_0437
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator.
  
  
 0.427
Pnap_3143
PFAM: regulatory protein, MarR; KEGG: bja:bll0108 transcriptional regulatory protein.
  
     0.410
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.