STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0830KEGG: pol:Bpro_0932 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Pnap_0831
KEGG: pol:Bpro_0933 hypothetical protein.
 
    0.984
Pnap_0832
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3264 4Fe-4S ferredoxin, iron-sulfur binding.
 
    0.966
Pnap_0833
PFAM: cytoplasmic chaperone TorD family protein; KEGG: pol:Bpro_0935 cytoplasmic chaperone TorD.
 
    0.958
fdhD
Formate dehydrogenase, subunit FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
 
 
 0.822
Pnap_0837
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pol:Bpro_0940 formate dehydrogenase, gamma subunit.
 
     0.798
Pnap_0834
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_0937 twin-arginine translocation pathway signal; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.787
Pnap_0835
Formate dehydrogenase beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_0938 4Fe-4S ferredoxin, iron-sulfur binding.
 
     0.756
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
  
    0.651
Pnap_1511
KEGG: pol:Bpro_1760 hypothetical protein.
 
     0.607
Pnap_2194
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: pol:Bpro_2264 RecB family exonuclease-like.
  
     0.600
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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