STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0852PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like; Belongs to the UPF0337 (CsbD) family. (73 aa)    
Predicted Functional Partners:
Pnap_0853
KEGG: pol:Bpro_1153 hypothetical protein.
  
  
 0.864
Pnap_0920
PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328.
 
  
 0.863
Pnap_0032
PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328.
 
  
 0.835
Pnap_0916
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated.
 
  
 0.803
Pnap_0915
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated.
 
  
 0.784
Pnap_0234
PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458.
   
    0.540
Pnap_3185
PFAM: glycosyl transferase, family 2; KEGG: eli:ELI_12215 glycosyl transferase, group 2 family protein.
   
    0.530
Pnap_3485
PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2174 glycosyl transferase, family 2.
   
    0.530
Pnap_1352
KEGG: pol:Bpro_3349 hypothetical protein.
  
  
 0.486
Pnap_1755
PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM.
  
  
 0.466
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.