STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0865KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase. (236 aa)    
Predicted Functional Partners:
Pnap_0866
KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
 0.999
Pnap_2657
KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
 
 0.997
Pnap_0867
KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.971
Pnap_2136
KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.935
Pnap_2121
3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1857 alpha/beta hydrolase fold.
  
 
 0.929
Pnap_3474
KEGG: pol:Bpro_3953 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.916
Pnap_3908
Maleylacetate reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase.
  
 
 0.910
Pnap_0868
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_B5588 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR.
  
  
 0.583
Pnap_0864
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family.
  
  
 0.565
Pnap_0869
PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065.
       0.474
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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