STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0943Acetone carboxylase, beta subunit; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 hydantoinase/oxoprolinase:hydantoinaseoxoprolina se, N-terminal. (715 aa)    
Predicted Functional Partners:
Pnap_0942
Acetone carboxylase, alpha subunit; PFAM: Hydantoinase B/oxoprolinase; KEGG: dar:Daro_1019 hydantoinase B/oxoprolinase.
 
 0.965
Pnap_0941
KEGG: rme:Rmet_4107 acetone carboxylase gamma subunit.
 
 
 
 0.941
Pnap_1162
PFAM: Hydantoinase B/oxoprolinase; KEGG: fra:Francci3_2242 hydantoinase B/oxoprolinase.
 
 0.860
Pnap_1164
KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like.
 
 
 
 0.856
Pnap_0944
GAF modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator.
 
     0.626
secB2
Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.563
Pnap_1517
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing).
 
 
0.538
Pnap_1166
GAF modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator.
 
     0.512
Pnap_4020
Dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+); TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mlo:mll1643 dihydropyrimidine dehydrogenase.
     
  0.499
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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