STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0954PFAM: malonate transporter MadL subunit; KEGG: pae:PA0215 probable transporter. (139 aa)    
Predicted Functional Partners:
Pnap_0953
PFAM: malonate/sodium symporter MadM subunit; KEGG: pae:PA0216 probable transporter.
 
   
 0.953
Pnap_0948
PFAM: malonate decarboxylase delta subunit; KEGG: reu:Reut_B4927 malonate decarboxylase delta subunit.
 
    0.829
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
    0.758
Pnap_0955
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B1014 transcriptional regulator, LysR family.
 
     0.751
Pnap_0946
KEGG: reu:Reut_B4925 malonate decarboxylase alpha subunit.
 
  
 0.737
Pnap_0949
KEGG: psb:Psyr_0445 acetyl-CoA carboxylase beta subunit.
 
    0.697
Pnap_0950
PFAM: malonate decarboxylase gamma subunit; KEGG: reu:Reut_B4929 malonate decarboxylase gamma subunit.
 
    0.691
Pnap_0951
KEGG: pae:PA0213 phosphoribosyl-dephospho-CoA transferase.
 
    0.686
Pnap_0952
PFAM: acyl transferase domain protein; KEGG: reu:Reut_B4931 acyl transferase region.
 
  
 0.423
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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