STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0963KEGG: pfo:Pfl_0744 hypothetical protein. (515 aa)    
Predicted Functional Partners:
Pnap_0964
KEGG: rso:RSc2483 hypothetical protein.
      0.974
Pnap_0965
Hypothetical protein.
       0.773
Pnap_0966
Hypothetical protein.
       0.773
Pnap_0967
Hypothetical protein.
       0.773
Pnap_2464
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein.
  
 
 0.773
Pnap_2467
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein.
  
 
 0.773
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
 
 0.771
Pnap_3320
KEGG: rso:RSc1898 hypothetical phage-related protein.
  
 
 0.771
Pnap_0968
Hypothetical protein.
       0.569
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.514
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.