STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_0995KEGG: tde:TDE1620 hypothetical protein. (669 aa)    
Predicted Functional Partners:
Pnap_0996
KEGG: tde:TDE1621 predicted ATP-dependent endonuclease of the OLD family.
 
   
 0.952
Pnap_1474
PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase.
     
  0.900
Pnap_0997
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: pol:Bpro_1393 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
 
     0.600
Pnap_3263
PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cfe:CF0624 DNA polymerase III epsilon chain.
  
  
 0.593
Pnap_0994
Uncharacterized conserved small protein-like protein; KEGG: bxe:Bxe_A3975 transcriptional regulator, XRE family.
       0.574
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.501
Pnap_3926
PFAM: DNA-directed DNA polymerase; KEGG: psp:PSPPH_4219 DNA polymerase I domain protein.
   
 
 0.501
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.492
Pnap_0999
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: pol:Bpro_1395 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
     0.469
Pnap_1000
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1396 ABC transporter related.
 
     0.466
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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