STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1012KEGG: pol:Bpro_1428 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Pnap_3599
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mfa:Mfla_1253 TonB-dependent receptor.
  
 
 0.844
Pnap_1703
Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.592
Pnap_1013
PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182.
       0.564
Pnap_1706
KEGG: pol:Bpro_2305 hypothetical protein.
  
 
 0.557
Pnap_2368
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein.
   
 
 0.555
Pnap_1924
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR.
  
 
 0.535
Pnap_2570
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
  
 
 0.535
Pnap_2923
Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2891 biopolymer transport protein ExbD/TolR; TC 2.C.1.2.1.
  
 
 0.535
Pnap_3787
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR.
  
 
 0.535
Pnap_1925
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel.
  
 
 0.498
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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