STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1035PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding. (506 aa)    
Predicted Functional Partners:
Pnap_1034
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase.
 0.999
Pnap_1047
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
  
  0.977
Pnap_1040
Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
 
  
 0.941
ppnP
Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.900
Pnap_1013
PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182.
 
  
 0.842
Pnap_0356
PFAM: Transthyretin; KEGG: atc:AGR_C_4223 conserved hypothetical protein PA1518; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.773
Pnap_0357
PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein.
 
     0.758
Pnap_2697
PFAM: protein of unknown function DUF182; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0866 protein of unknown function DUF182.
 
  
 0.744
Pnap_0355
PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase.
 
     0.658
Pnap_2174
PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2403 aminotransferase, class I and II.
 
      0.635
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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