STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1085KEGG: rso:RSc2362 probable transmembrane protein. (260 aa)    
Predicted Functional Partners:
Pnap_1084
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rso:RSc2361 probable RNA polymerase sigma-e factor sigma-24 homolog transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.954
Pnap_1353
KEGG: hypothetical protein.
 
   
 0.619
ppnP
Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
       0.530
Pnap_0112
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_0166 AAA ATPase, central region.
  
     0.482
Pnap_0923
PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
     0.477
argG
PFAM: argininosuccinate synthase; KEGG: pol:Bpro_1599 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
       0.465
Pnap_1487
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative.
  
     0.442
Pnap_3994
PFAM: response regulator receiver; KEGG: pol:Bpro_0607 response regulator receiver domain protein (CheY-like).
  
     0.432
Pnap_0398
PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
     0.429
Pnap_1357
KEGG: pol:Bpro_3339 hypothetical protein.
  
   
 0.411
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.