STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1088Prolyl aminopeptidase, Serine peptidase, MEROPS family S33; KEGG: pol:Bpro_1603 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family. (326 aa)    
Predicted Functional Partners:
Pnap_0733
PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2466 putative proline iminopeptidase.
  
  
 
0.925
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
  0.901
Pnap_2465
PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase.
     
  0.900
Pnap_3771
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rfr:Rfer_3883 ornithine cyclodeaminase.
     
  0.900
Pnap_4070
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.900
Pnap_1089
TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1604 FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
   
 
 0.783
Pnap_1087
PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein; Belongs to the ArsC family.
       0.547
Pnap_1090
PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related.
       0.541
Pnap_1091
PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein.
       0.519
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
  
 0.439
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.