STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_1116PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_0167 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (234 aa)    
Predicted Functional Partners:
Pnap_1117
KEGG: pol:Bpro_0168 phenylalanine-4-hydroxylase, monomeric form; TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase.
   
 
 0.786
Pnap_1118
Fumarylacetoacetate hydrolase; KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase.
  
   0.726
Pnap_1119
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0680 glyoxalase family protein.
  
   0.723
Pnap_1113
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3788 short-chain dehydrogenase/reductase SDR.
  
     0.703
Pnap_1120
KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.703
Pnap_0518
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR.
  
     0.660
Pnap_1121
PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_C6250 hypothetical protein.
       0.623
Pnap_1275
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1029 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.594
Pnap_3235
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3876 short-chain dehydrogenase/reductase SDR.
  
     0.571
Pnap_1122
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C6960 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
   
   0.526
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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